Index

A

add_background_pattern() (in module brian2tools.plotting) (in module brian2tools.plotting.base) add_component() (brian2tools.nmlexport.supporting.NeuroMLSimpleNetwork method) add_display() (brian2tools.nmlexport.supporting.NeuroMLSimulation method)

add_eventoutputfile() (brian2tools.nmlexport.supporting.NeuroMLSimulation method) add_eventselection() (brian2tools.nmlexport.supporting.NeuroMLSimulation method) add_line() (brian2tools.nmlexport.supporting.NeuroMLSimulation method) add_outputcolumn() (brian2tools.nmlexport.supporting.NeuroMLSimulation method) add_outputfile() (brian2tools.nmlexport.supporting.NeuroMLSimulation method)

B

brian2tools module brian2tools.baseexport module brian2tools.baseexport.collector module brian2tools.baseexport.device module brian2tools.baseexport.helper module brian2tools.mdexport module brian2tools.mdexport.expander module brian2tools.mdexport.mdexporter module brian2tools.nmlexport module brian2tools.nmlexport.lemsexport module brian2tools.nmlexport.lemsrendering module brian2tools.nmlexport.supporting module brian2tools.nmlimport module

brian2tools.nmlimport.helper module brian2tools.nmlimport.nml module brian2tools.nmlutils module brian2tools.nmlutils.utils module brian2tools.plotting module brian2tools.plotting.base module brian2tools.plotting.data module brian2tools.plotting.morphology module brian2tools.plotting.synapses module brian_plot() (in module brian2tools.plotting) (in module brian2tools.plotting.base) brian_unit_to_lems() (in module brian2tools.nmlexport.supporting) build() (brian2tools.nmlexport.supporting.NeuroMLPoissonGenerator method) (brian2tools.nmlexport.supporting.NeuroMLSimpleNetwork method) (brian2tools.nmlexport.supporting.NeuroMLSimulation method) (brian2tools.nmlexport.supporting.NeuroMLTarget method) build_morphology() (brian2tools.nmlimport.nml.NMLMorphology method)

C

check_plural() (brian2tools.mdexport.expander.MdExpander method) collect_Equations() (in module brian2tools.baseexport.collector) collect_EventMonitor() (in module brian2tools.baseexport.collector) collect_Events() (in module brian2tools.baseexport.collector) collect_NeuronGroup() (in module brian2tools.baseexport.collector) collect_PoissonGroup() (in module brian2tools.baseexport.collector) collect_PoissonInput() (in module brian2tools.baseexport.collector) collect_PopulationRateMonitor() (in module brian2tools.baseexport.collector)

collect_SpatialNeuron() (in module brian2tools.baseexport.collector) collect_SpikeGenerator() (in module brian2tools.baseexport.collector) collect_SpikeMonitor() (in module brian2tools.baseexport.collector) collect_SpikeSource() (in module brian2tools.baseexport.collector) collect_StateMonitor() (in module brian2tools.baseexport.collector) collect_Synapses() (in module brian2tools.baseexport.collector) create_md_string() (brian2tools.mdexport.expander.MdExpander method) create_simulation() (brian2tools.nmlexport.supporting.NeuroMLSimulation method)

E

expand_connector() (brian2tools.mdexport.expander.MdExpander method) expand_equation() (brian2tools.mdexport.expander.MdExpander method) expand_equations() (brian2tools.mdexport.expander.MdExpander method) expand_event() (brian2tools.mdexport.expander.MdExpander method) expand_events() (brian2tools.mdexport.expander.MdExpander method) expand_group() (brian2tools.mdexport.expander.MdExpander method) expand_identifier() (brian2tools.mdexport.expander.MdExpander method) expand_identifiers() (brian2tools.mdexport.expander.MdExpander method)

expand_initializer() (brian2tools.mdexport.expander.MdExpander method) expand_network_header() (brian2tools.mdexport.expander.MdExpander method) expand_pathway() (brian2tools.mdexport.expander.MdExpander method) expand_pathways() (brian2tools.mdexport.expander.MdExpander method) expand_run_header() (brian2tools.mdexport.expander.MdExpander method) expand_runregularly() (brian2tools.mdexport.expander.MdExpander method) expand_SpikeSource() (brian2tools.mdexport.expander.MdExpander method) expand_summed_variable() (brian2tools.mdexport.expander.MdExpander method) expand_summed_variables() (brian2tools.mdexport.expander.MdExpander method)

F

formatter() (in module brian2tools.nmlimport.helper)

from_string() (in module brian2tools.nmlexport.supporting) (in module brian2tools.nmlutils.utils)

G

get_channel_equations() (brian2tools.nmlimport.nml.NMLMorphology method) get_child_segments() (in module brian2tools.nmlimport.helper)

get_parent_segment() (in module brian2tools.nmlimport.helper) get_resolved_group_ids() (brian2tools.nmlimport.nml.NMLMorphology method) get_segment_group_ids() (brian2tools.nmlimport.nml.NMLMorphology method)

M

MdExpander (class in brian2tools.mdexport.expander) module brian2tools brian2tools.baseexport brian2tools.baseexport.collector brian2tools.baseexport.device brian2tools.baseexport.helper brian2tools.mdexport brian2tools.mdexport.expander brian2tools.mdexport.mdexporter brian2tools.nmlexport brian2tools.nmlexport.lemsexport brian2tools.nmlexport.lemsrendering brian2tools.nmlexport.supporting brian2tools.nmlimport brian2tools.nmlimport.helper brian2tools.nmlimport.nml brian2tools.nmlutils brian2tools.nmlutils.utils brian2tools.plotting brian2tools.plotting.base brian2tools.plotting.data brian2tools.plotting.morphology brian2tools.plotting.synapses

N

NeuroMLPoissonGenerator (class in brian2tools.nmlexport.supporting) NeuroMLSimpleNetwork (class in brian2tools.nmlexport.supporting) NeuroMLSimulation (class in brian2tools.nmlexport.supporting)

NeuroMLTarget (class in brian2tools.nmlexport.supporting) NMLMorphology (class in brian2tools.nmlimport.nml) NMLMorphology.SectionObject (class in brian2tools.nmlimport.nml)

P

plot_dendrogram() (in module brian2tools.plotting) (in module brian2tools.plotting.morphology) plot_morphology() (in module brian2tools.plotting) (in module brian2tools.plotting.morphology) plot_raster() (in module brian2tools.plotting) (in module brian2tools.plotting.data) plot_rate() (in module brian2tools.plotting) (in module brian2tools.plotting.data)

plot_state() (in module brian2tools.plotting) (in module brian2tools.plotting.data) plot_synapses() (in module brian2tools.plotting) (in module brian2tools.plotting.synapses) prepare_array() (brian2tools.mdexport.expander.MdExpander method) prepare_math_statements() (brian2tools.mdexport.expander.MdExpander method) printtree() (brian2tools.nmlimport.nml.NMLMorphology method)

R

read_nml_dims() (in module brian2tools.nmlexport.supporting)

read_nml_units() (in module brian2tools.nmlexport.supporting) render_expression() (brian2tools.mdexport.expander.MdExpander method)

S

set_neuron_properties() (brian2tools.nmlimport.nml.NMLMorphology method)

set_template_dir() (brian2tools.mdexport.expander.MdExpander method) string_to_quantity() (in module brian2tools.nmlutils.utils)

U

update_simulation_attribute() (brian2tools.nmlexport.supporting.NeuroMLSimulation method)

V

validate_morphology() (in module brian2tools.nmlimport.nml)

ValidationException